Thesis stuff - PyMOL - how to remove alternative conformation; renumbering, measuring distances with 2 decimals
Sometimes I'm googling stuff. How to do something.. And I'm forgetting then. Or writing on paper. But better to keep it on-line, so other googlers can find it, too ;) Thanks for http://randomthesisstuff.blogspot.co.uk/ useful! Another great one - http://www.keepcalmandpublishpapers.com/ So PyMOL, alternative conformation . It makes messy some of my calculations to keep alternative conformations, so to remove it, simply type: PyMOL>remove not (alt ''+A) PyMOL>alter all, alt='' But it's choosing conformation A, not that with higher occupancy! See here - https://pymolwiki.org/index.php/Property_Selectors#Alternate_Locations Alternatively in Phenix - Model tools - pdb tools - options - remove alternate conformers, but it gave me the same output as PyMOL, conformation A, not higher occupancy. You can do it in Coot , but then (probably?) have to go from residue to residue (with double occupancy), I didn't find how to do it for...