phasing (pseudo) 3D spectrum in TopSpin

1. Open your 3D processed spectrum.
2. Click on "show F2-F3 plane" (button "23" in TopSpin 3.2)

xfb

3. Select plane orientation: "23"
4. Select plane number: "1"
5. Enter new PROCNO: can be "231"
6. Interactive phase correction
7. Add 3 points, then "R" - start the phase correction on rows

8. Phase and save.
7. Save for 3D spectrum (second button after "R")
8. Return to 3D spectrum.
9. process: tf3 and tf2

check you F2-F3 plane and enjoy! ;-)

Komentarze

Popularne posty z tego bloga

How to make gif from PyMOL - easily!

Firstly, save your movie as png images. You can set_view/get_view to have the right orientation. To save scenes go to > scene > store > F 1/2/3... then > Movie > Program > Scene Loop I use usually: Nutate > 30 deg. over 4 sec. > file > save movie as png images then for 300 images you can easily use http://gifmaker.me/ (quite slow even with highest speed) or https://ezgif.com/maker up to 2000 files (delay time 1 makes a nice speed) or it's easy to find some png to gif conventer online

Czytaj więcej

Thesis stuff - PyMOL - how to remove alternative conformation; renumbering, measuring distances with 2 decimals

Sometimes I'm googling stuff. How to do something.. And I'm forgetting then. Or writing on paper. But better to keep it on-line, so other googlers can find it, too ;) Thanks for http://randomthesisstuff.blogspot.co.uk/ useful! Another great one - http://www.keepcalmandpublishpapers.com/ So PyMOL, alternative conformation . It makes messy some of my calculations to keep alternative conformations, so to remove it, simply type: PyMOL>remove not (alt ''+A) PyMOL>alter all, alt='' But it's choosing conformation A, not that with higher occupancy! See here - https://pymolwiki.org/index.php/Property_Selectors#Alternate_Locations Alternatively in Phenix - Model tools - pdb tools - options - remove alternate conformers, but it gave me the same output as PyMOL, conformation A, not higher occupancy. You can do it in Coot , but then (probably?) have to go from residue to residue (with double occupancy), I didn't find how to do it for whole

Czytaj więcej

thesisandpapers

Szukaj na tym blogu